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q30/codescript/README.md

README.md 324B
原始文件 Normal View 歷史記錄

sentieon quality yeild
4 年之前
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  1. # q30

  2. A simple script to calculate q20/q30 percentages of a fastq file (can be gzipped)

  3. ```shell

  4. python q30.py <fastq_file_name>

  5. ```

  6. # output

  7. ```

  8. ('total bases:', 1386659)

  9. ('q20 bases:', 1280980)

  10. ('q30 bases:', 1232024)

  11. ('q20 percents:', 92.37887613320939)

  12. ('q30 percents:', 88.84837584438567)

  13. Time used: 0.221389055252

  14. ```