tar file name

tasks/vcfeval.wdl

@@ -14,8 +14,9 @@ task vcfeval {
 	File giab_snv_idx
 	File giab_indel
 	File giab_indel_idx
-
 	File sdf
+	String kernel
+	String nu
 	String docker
 	String cluster_config
 	String disk_size
@@ -25,18 +26,18 @@ task vcfeval {
 		set -o pipefail
 		set -e
 	
-		/opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg vcfeval -b ${giab_snv} -c ${snv_true_vcf} -o snv_true -t ${sdf}
+		/opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg vcfeval -b ${giab_snv} -c ${snv_true_vcf} -o ${kernel}_${nu}_snv_true -t ${sdf}
 
-		/opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg vcfeval -b ${giab_snv} -c ${snv_false_vcf} -o snv_false -t ${sdf}
+		/opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg vcfeval -b ${giab_snv} -c ${snv_false_vcf} -o ${kernel}_${nu}_snv_false -t ${sdf}
 
-		/opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg vcfeval -b ${giab_indel} -c ${indel_true_vcf} -o indel_true -t ${sdf}
+		/opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg vcfeval -b ${giab_indel} -c ${indel_true_vcf} -o ${kernel}_${nu}_indel_true -t ${sdf}
 
-		/opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg vcfeval -b ${giab_indel} -c ${indel_false_vcf} -o indel_false -t ${sdf}
+		/opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg vcfeval -b ${giab_indel} -c ${indel_false_vcf} -o ${kernel}_${nu}_indel_false -t ${sdf}
 
-		tar -zcvf snv_true.zip snv_true
-		tar -zcvf snv_false.zip snv_false
-		tar -zcvf indel_true.zip indel_true
-		tar -zcvf indel_false.zip indel_false
+		tar -zcvf ${kernel}_${nu}_snv_true.zip ${kernel}_${nu}_snv_true
+		tar -zcvf ${kernel}_${nu}_snv_false.zip ${kernel}_${nu}_snv_false
+		tar -zcvf ${kernel}_${nu}_indel_true.zip ${kernel}_${nu}_indel_true
+		tar -zcvf ${kernel}_${nu}_indel_false.zip ${kernel}_${nu}_indel_false
 
 	>>>
 
@@ -47,9 +48,9 @@ task vcfeval {
 		dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
 	}
 	output {
-		File snv_true_zip="snv_true.zip"
-		File snv_false_zip="snv_false.zip"
-		File indel_true_zip="indel_true.zip"
-		File indel_false_zip="indel_false.zip"
+		File snv_true_zip="${kernel}_${nu}_snv_true.zip"
+		File snv_false_zip="${kernel}_${nu}_snv_false.zip"
+		File indel_true_zip="${kernel}_${nu}_indel_true.zip"
+		File indel_false_zip="${kernel}_${nu}_indel_false.zip"
 	}
 }

workflow.wdl

@@ -98,6 +98,8 @@ workflow {{ project_name }} {
 			giab_indel=giab_indel,
 			giab_indel_idx=giab_indel_idx,
 			sdf=sdf,
+			kernel=kernel,
+			nu=nu,
 			cluster_config=cluster_config,
 			disk_size=disk_size
 	}