|
- cat chr*gt | cut -f1-9,10,41,74,107 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_BGI_SEQ2000_BGI_1_20180518.vcf
- cat chr*gt | awk '{print $1"\t"$2"\t"$3"\t"$4"\t"$5"\t"$6"\t"$7"\t"$8"\t"$9"\t"$11"\t"$52"\t"$85"\t"$12}' | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_BGI_SEQ2000_BGI_2_20180518.vcf
- cat chr*gt | cut -f1-9,21,30,63,96 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_BGI_SEQ2000_BGI_3_20180518.vcf
-
- cat chr*gt | cut -f1-9,88,91,94,98 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_BGI_T7_WGE_1_20191105.vcf
- cat chr*gt | cut -f1-9,89,92,95,99 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_BGI_T7_WGE_2_20191105.vcf
- cat chr*gt | cut -f1-9,90,93,97,100 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_BGI_T7_WGE_3_20191105.vcf
-
- cat chr*gt | cut -f1-9,61,68,75,81 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_Nova_ARD_1_20181108.vcf
- cat chr*gt | cut -f1-9,62,69,76,82 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_Nova_ARD_2_20181108.vcf
- cat chr*gt | cut -f1-9,64,70,77,83 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_Nova_ARD_3_20181108.vcf
-
- cat chr*gt | cut -f1-9,65,71,78,84 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_Nova_ARD_4_20181108.vcf
- cat chr*gt | cut -f1-9,66,72,79,86 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_Nova_ARD_5_20181108.vcf
- cat chr*gt | cut -f1-9,67,73,80,87 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_Nova_ARD_6_20181108.vcf
-
- cat chr*gt | cat chr*gt | awk '{print $1"\t"$2"\t"$3"\t"$4"\t"$5"\t"$6"\t"$7"\t"$8"\t"$9"\t"$114"\t"$117"\t"$15"\t"$18}' | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_Nova_BRG_1_20180930.vcf
- cat chr*gt | cat chr*gt | awk '{print $1"\t"$2"\t"$3"\t"$4"\t"$5"\t"$6"\t"$7"\t"$8"\t"$9"\t"$115"\t"$13"\t"$16"\t"$19}' | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_Nova_BRG_2_20180930.vcf
- cat chr*gt | awk '{print $1"\t"$2"\t"$3"\t"$4"\t"$5"\t"$6"\t"$7"\t"$8"\t"$9"\t"$116"\t"$14"\t"$17"\t"$20}' | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_Nova_BRG_3_20180930.vcf
-
- cat chr*gt | cut -f1-9,101,102,103,104 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_Nova_WUX_1_20190917.vcf
- cat chr*gt | awk '{print $1"\t"$2"\t"$3"\t"$4"\t"$5"\t"$6"\t"$7"\t"$8"\t"$9"\t"$109"\t"$106"\t"$108"\t"$105}' | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_Nova_WUX_2_20190917.vcf
- cat chr*gt | awk '{print $1"\t"$2"\t"$3"\t"$4"\t"$5"\t"$6"\t"$7"\t"$8"\t"$9"\t"$113"\t"$112"\t"$111"\t"$110}' | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_Nova_WUX_3_20190917.vcf
-
- cat chr*gt | cut -f1-9,22,25,28,32 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_XTen_ARD_1_20170403.vcf
- cat chr*gt | cut -f1-9,23,26,29,33 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_XTen_ARD_2_20170403.vcf
- cat chr*gt | cut -f1-9,24,27,31,34 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_XTen_ARD_3_20170403.vcf
-
- cat chr*gt | cut -f1-9,35,38,42,45 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_XTen_NVG_1_20170329.vcf
- cat chr*gt | cut -f1-9,36,39,43,46 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_XTen_NVG_2_20170329.vcf
- cat chr*gt | cut -f1-9,37,40,44,47 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_XTen_NVG_3_20170329.vcf
-
- cat chr*gt | cut -f1-9,48,51,55,58 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_XTen_WUX_1_20170216.vcf
- cat chr*gt | cut -f1-9,49,53,56,59 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_XTen_WUX_2_20170216.vcf
- cat chr*gt | cut -f1-9,50,54,57,60 | grep -v '#CHROM' | sort -k1,1 -k2,2n | cat header - > Quartet_DNA_ILM_XTen_WUX_3_20170216.vcf
|
