ped file

tasks/sister.wdl

 		${family_name}	${LCL7_name}	0	0	1	-9
 		${family_name}	${LCL5_name}	${LCL7_name}	${LCL8_name}	2	-9" > ${family_name}.D5.ped
 
-		mkdir D5
+		mkdir VBT_D5
 		/opt/VBT-TrioAnalysis/vbt mendelian -ref ${ref_dir}/${fasta} -mother ${family_name}.vcf -father ${family_name}.vcf -child ${family_name}.vcf -pedigree ${family_name}.D5.ped -outDir D5 -out-prefix ${family_name}.D5 --output-violation-regions -thread-count $nt
 	# prepare ped file, D6
 		echo "${family_name}	${LCL8_name}	0	0	2	-9
 		${family_name}	${LCL7_name}	0	0	1	-9
 		${family_name}	${LCL6_name}	${LCL7_name}	${LCL8_name}	2	-9" > ${family_name}.D6.ped
 
-		mkdir D6
+		mkdir VBT_D6
 		/opt/VBT-TrioAnalysis/vbt mendelian -ref ${ref_dir}/${fasta} -mother ${family_name}.vcf -father ${family_name}.vcf -child ${family_name}.vcf -pedigree ${family_name}.D6.ped -outDir D6 -out-prefix ${family_name}.D6 --output-violation-regions -thread-count $nt
 	>>>