task mergeVCFInfo { Array[File] vcf_gz Array[File] vcf_idx String sample String docker String cluster_config String disk_size command <<< rtg vcfmerge --force-merge-all -o ${sample}.merged.info.vcf.gz ${sep=" " vcf_gz} >>> runtime { docker:docker cluster: cluster_config systemDisk: "cloud_ssd 40" dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" } output { File merged_vcf = "${sample}.merged.info.vcf.gz" File merged_vcf_idx = "${sample}.merged.info.vcf.gz.tbi" } }