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exclude vcf

master
LUYAO REN 5 years ago
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commit
b9f327dcc5
1 changed files with 1 additions and 1 deletions
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    -1
      tasks/mendelian.wdl

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tasks/mendelian.wdl View File

@@ -37,7 +37,7 @@ task mendelian {

rtg vcffilter -i ${child_vcf_gz} -o ${child_name}.violation.vcf.gz --include-vcf=${family_name}.violation.vcf.gz

rtg vcffilter -i ${child_vcf_gz} -o ${child_name}.consistent.vcf.gz --include-vcf=${family_name}.consistent.vcf.gz
rtg vcffilter -i ${child_vcf_gz} -o ${child_name}.consistent.vcf.gz --exclude-vcf=${family_name}.consistent.vcf.gz

>>>


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