LUYAO REN
5 anni fa
1 ha cambiato i file con 2 aggiunte e 2 eliminazioni
+ 2
- 2
tasks/mendelian.wdl
Vedi File
| rtg index -f vcf ${family_name}.consistent.vcf.gz | rtg index -f vcf ${family_name}.consistent.vcf.gz | ||||
| zcat ${child_vcf_gz} | grep '##' > child_header | zcat ${child_vcf_gz} | grep '##' > child_header | ||||
| zcat ${family_name}.violation.vcf.gz | grep -v '##' | cut -f1-10 | awk '$10!~/\./' | cat header - > ${child_name}.violation.vcf | |||||
| zcat ${family_name}.consistent.vcf.gz | grep -v '##' | cut -f1-10 | awk '$10!~/\./' | cat header - > ${child_name}.consistent.vcf | |||||
| zcat ${family_name}.violation.vcf.gz | grep -v '##' | cut -f1-10 | awk '$10!~/\./' | cat child_header - > ${child_name}.violation.vcf | |||||
| zcat ${family_name}.consistent.vcf.gz | grep -v '##' | cut -f1-10 | awk '$10!~/\./' | cat child_header - > ${child_name}.consistent.vcf | |||||
| rtg bgzip ${child_name}.violation.vcf | rtg bgzip ${child_name}.violation.vcf | ||||
| rtg index -f vcf ${child_name}.violation.vcf.gz | rtg index -f vcf ${child_name}.violation.vcf.gz |
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