scatter sample

workflow.wdl

@@ -13,11 +13,11 @@ workflow {{ project_name }} {
 	String disk_size
 	String cluster_config
 	
-	scatter (sample in inputSamples){
+	scatter (quartet in inputSamples){
 		call CallableLoci.CallableLoci as CallableLoci {
 			input: 
-			bam=sample[0],
-			bam_index=sample[1],
+			bam=quartet[0],
+			bam_index=quartet[1],
 			ref_dir=ref_dir,
 			fasta=fasta,
 			sample=sample,