renluyao
/
high_confidence_calls_manuscript
Watch 1
Star 0
Fork 0
Code Issues 0 Pull Requests 0 Releases 0 Wiki Activity
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
10 Commits
1 Branch
Tree: 3ccd66f2ea
Branches Tags
${ item.name }
Create branch ${ searchTerm }
from '3ccd66f2ea'
${ noResults }
high_confidence_calls_manus.../inputs

35 lines
3.3KB
Raw Blame History 

  1. {

  2.   "{{ project_name }}.LCL7merge.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  3.   "{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",

  4.   "{{ project_name }}.LCL5VCFrename.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  5.   "{{ project_name }}.LCL8mergeInfo.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/high_confidence_call_manuscript:v1.1",

  6.   "{{ project_name }}.LCL6mendelian.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/vbt:v1.1",

  7.   "{{ project_name }}.LCL5mergeInfo.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/high_confidence_call_manuscript:v1.1", 

  8.   "{{ project_name }}.mergeSister.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  9.   "{{ project_name }}.LCL5mendelian.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/vbt:v1.1",

  10.   "{{ project_name }}.LCL6allInfozipIndex.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  11.   "{{ project_name }}.LCL5allInfozipIndex.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  12.   "{{ project_name }}.disk_size": "150",

  13.   "{{ project_name }}.LCL7mergeInfo.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/high_confidence_call_manuscript:v1.1",

  14.   "{{ project_name }}.inputSamplesFile": "{{ inputSamplesFile }}",

  15.   "{{ project_name }}.LCL6merge.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  16.   "{{ project_name }}.LCL6variantsNorm.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9",

  17.   "{{ project_name }}.LCL6zipIndex.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  18.   "{{ project_name }}.LCL7allInfozipIndex.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  19.   "{{ project_name }}.LCL6mergeInfo.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/high_confidence_call_manuscript:v1.1", 

  20.   "{{ project_name }}.LCL6VCFrename.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  21.   "{{ project_name }}.LCL5merge.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  22.   "{{ project_name }}.reformVCF.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/high_confidence_call:v1.1",

  23.   "{{ project_name }}.LCL5zipIndex.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  24.   "{{ project_name }}.cluster_config": "OnDemand bcs.b4.xlarge img-ubuntu-vpc",

  25.   "{{ project_name }}.LCL8allInfozipIndex.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  26.   "{{ project_name }}.LCL7variantsNorm.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9",

  27.   "{{ project_name }}.LCL8merge.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  28.   "{{ project_name }}.LCL5variantsNorm.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9",

  29.   "{{ project_name }}.LCL8variantsNorm.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9",

  30.   "{{ project_name }}.ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/"

  31. }

  32. 

  33.