task VCFrename { File trio_vcf_gz File trio_vcf_idx String mother_name String father_name String child_name String family_name String child String docker String cluster_config String disk_size command <<< echo "MOTHER ${mother_name}.${child} FATHER ${father_name}.${child} CHILD ${child_name}" > rename.txt rtg vcfannotate -i ${trio_vcf_gz} -o ${family_name}.${child}.rename.vcf.gz --relabel=rename.txt >>> runtime { docker:docker cluster: cluster_config systemDisk: "cloud_ssd 40" dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" } output { File rename_trio_vcf_gz = "${family_name}.${child}.rename.vcf.gz" File rename_trio_vcf_idx = "${family_name}.${child}.rename.vcf.gz.tbi" } }