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first_consensus_then_mendelian
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first_consensus_then_mendelian/codescripts/linux_command.sh

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  1. cat benchmark.men.vote.diffbed.filtered | awk '{print $1"\t"$2"\t"".""\t"$35"\t"$7"\t.\t.\t.\tGT\t"$6}' | grep -v '2_y' > LCL5.body

  2. cat benchmark.men.vote.diffbed.filtered | awk '{print $1"\t"$2"\t"".""\t"$35"\t"$15"\t.\t.\t.\tGT\t"$14}' | grep -v '2_y' > LCL6.body

  3. cat benchmark.men.vote.diffbed.filtered | awk '{print $1"\t"$2"\t"".""\t"$35"\t"$23"\t.\t.\t.\tGT\t"$22}' | grep -v '2_y' > LCL7.body

  4. cat benchmark.men.vote.diffbed.filtered | awk '{print $1"\t"$2"\t"".""\t"$35"\t"$31"\t.\t.\t.\tGT\t"$30}' | grep -v '2_y' > LCL8.body