first commit

inputs

@@ -1,7 +1,9 @@
 {
+  "{{ project_name }}.index.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",
   "{{ project_name }}.disk_size": "50",
-  "{{ project_name }}.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/gatk:v2019.01",
+  "{{ project_name }}.merge.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9",
   "{{ project_name }}.cluster_config": "OnDemand ecs.sn1ne.xlarge img-ubuntu-vpc",
-  "{{ project_name }}.gzvcf": "{{ gzvcf }}",
+  "{{ project_name }}.indel_gzvcf": "{{ indel_gzvcf }}",
+  "{{ project_name }}.snv_gzvcf": "{{ snv_gzvcf }}",
   "{{ project_name }}.sample": "{{ sample }}"
-}
+}

workflow.wdl

@@ -1,7 +1,7 @@
 import "./tasks/index.wdl" as index
 import "./tasks/merge.wdl" as merge
 
-workflow {{ project_name }} {
+workflow project_name {
 	File snv_gzvcf
 	File indel_gzvcf
 	String sample