file

tasks/benchmark.wdl

@@ -44,7 +44,9 @@ task benchmark {
 			/opt/hap.py/bin/hap.py /cromwell_root/tmp/reference_datasets_v202103/LCL8.high.confidence.calls.vcf.gz ${sample}.rtg.vcf.gz -f /cromwell_root/tmp/reference_datasets_v202103/Quartet.high.confidence.region.v202103.bed --threads $nt -o ${sample} -r ${ref_dir}/${fasta}
         else
         	echo "only for quartet samples"
-        fi		
+        fi
+
+        ls > file.txt
 	>>>
 
 	runtime {
@@ -67,5 +69,6 @@ task benchmark {
 		File summary = "${sample}.summary.csv"
 		File extended = "${sample}.extended.csv"
 		File metrics = "${sample}.metrics.json.gz"
+		File file = "file.txt"
 	}
 }