LCL8

tasks/homo_bed.wdl

@@ -20,7 +20,7 @@ task homo_bed {
 		cat ${LCL8_HR_bed} | grep -w '^chr1\|^chr2\|^chr3\|^chr4\|^chr5\|^chr6\|^chr7\|^chr8\|^chr9\|^chr10\|^chr11\|^chr12\|^chr13\|^chr14\|^chr15\|^chr16\|^chr17\|^chr18\|^chr19\|^chr20\|^chr21\|^chr22\|^chrX' > LCL8_HR_bed.chr1-22.x.bed
 
 
-		/opt/ccdg/bedtools-2.27.1/bin/bedtools multiinter -i LCL5_HR_bed.chr1-22.x.bed LCL6_HR_bed.chr1-22.x.bed LCL7_HR_bed.chr1-22.x.bed LCl8_HR_bed.chr1-22.x.bed > Quartet.HR.merged.bed
+		/opt/ccdg/bedtools-2.27.1/bin/bedtools multiinter -i LCL5_HR_bed.chr1-22.x.bed LCL6_HR_bed.chr1-22.x.bed LCL7_HR_bed.chr1-22.x.bed LCL8_HR_bed.chr1-22.x.bed > Quartet.HR.merged.bed
 
 		cat Quartet.HR.merged.bed | grep "1,2,3,4" | cut -f1-3 > Quartet.HR.merged.intersect.bed
 		>>>