LUYAO REN
5 years ago
1 changed files with 1 additions and 1 deletions
+ 1
- 1
tasks/annovar.wdl
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| command <<< | command <<< | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| /installations/annovar/table_annovar.pl ${vcf_file} ${database} -buildver hg38 -out ${sample} -remove -protocol refGene,ensGene,cytoBand,genomicSuperDups,ljb26_all,dbnsfp35c,intervar_20180118,cosmic70,exac03,gnomad30_genome,1000g2015aug_all,clinvar_20190305,gnomad211_genome -operation g,g,r,r,f,f,f,f,f,f,f,f,f -nastring . -vcfinput -thread $nt | |||||
| /installations/annovar/table_annovar.pl ${vcf_file} ${database} -buildver hg38 -out ${sample} -remove -protocol refGene,ensGene,ljb26_all,dbnsfp35c,intervar_20180118,cosmic70,exac03,gnomad30_genome,1000g2015aug_all,clinvar_20190305,gnomad211_genome -operation g,g,f,f,f,f,f,f,f,f,f -nastring . -vcfinput -thread $nt | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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