WGS_somatic_sentieon/inputs

{
  "{{ project_name }}.SENTIEON_INSTALL_DIR": "{{ SENTIEON_INSTALL_DIR }}",
  "{{ project_name }}.fasta": "{{ fasta }}",
  "{{ project_name }}.dbsnp_dir": "{{ dbsnp_dir }}",
  "{{ project_name }}.disk_size": "{{ disk_size }}",
  "{{ project_name }}.FASTQCdocker": "{{ FASTQCdocker }}",
  "{{ project_name }}.screen_ref_dir": "{{ screen_ref_dir }}",
  "{{ project_name }}.tumor_fastq_2": "{{ tumor_fastq_2 }}",
  "{{ project_name }}.dbmills_dir": "{{ dbmills_dir }}",
  "{{ project_name }}.fastq_screen_conf": "{{ fastq_screen_conf }}",
  "{{ project_name }}.normal_fastq_1": "{{ normal_fastq_1 }}",
  "{{ project_name }}.FASTQSCREENdocker": "{{ FASTQSCREENdocker }}",
  "{{ project_name }}.cluster_config": "{{ cluster_config }}",
  "{{ project_name }}.SENTIEON_LICENSE": "{{ SENTIEON_LICENSE }}",
  "{{ project_name }}.tumor_fastq_1": "{{ tumor_fastq_1 }}",
  "{{ project_name }}.normal_fastq_2": "{{ normal_fastq_2 }}",
  "{{ project_name }}.SENTIEONdocker": "{{ SENTIEONdocker }}",
  "{{ project_name }}.QUALIMAPdocker": "{{ QUALIMAPdocker }}",
  "{{ project_name }}.db_mills": "{{ db_mills }}",
  "{{ project_name }}.sample": "{{ sample }}",
  "{{ project_name }}.dbsnp": "{{ dbsnp }}",
  "{{ project_name }}.ref_dir": "{{ ref_dir }}"
}