first commit

defaults

@@ -5,19 +5,14 @@
   "disk_size": "500",
   "FASTQCdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:0.11.8",
   "screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",
-  "tumor_fastq_2": "{{ tumor_fastq_2 }}",
   "dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
   "fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",
-  "normal_fastq_1": "{{ normal_fastq_1 }}",
   "FASTQSCREENdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",
   "cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",
   "SENTIEON_LICENSE": "192.168.0.55:8990",
-  "tumor_fastq_1": "{{ tumor_fastq_1 }}",
-  "normal_fastq_2": "{{ normal_fastq_2 }}",
   "SENTIEONdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2019.11.28",
   "QUALIMAPdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",
   "db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf",
-  "sample": "{{ sample }}",
   "dbsnp": "dbsnp_146.hg38.vcf",
   "ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/"
 }