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WGS_somatic_sentieon
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WGS_somatic_sentieon/defaults

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  1. {

  2.   "SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",

  3.   "fasta": "GRCh38.d1.vd1.fa",

  4.   "dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",

  5.   "disk_size": "500",

  6.   "FASTQCdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:0.11.8",

  7.   "screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",

  8.   "dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",

  9.   "fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",

  10.   "FASTQSCREENdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",

  11.   "cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",

  12.   "SENTIEON_LICENSE": "192.168.0.55:8990",

  13.   "SENTIEONdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2019.11.28",

  14.   "QUALIMAPdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",

  15.   "db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf",

  16.   "dbsnp": "dbsnp_146.hg38.vcf",

  17.   "ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/"

  18. }