Strelka2

You don’t need to tune the parameters of strelka. It bases on trained models, you may train new models to improve performance.

Two steps:

1. Generate the configuration

1. Run Strelka

Per sample run time

4h30min

Reference

1. Strelka User Guide https://github.com/Illumina/strelka/blob/v2.9.x/docs/userGuide/README.md
2. Strelka paper https://www.nature.com/articles/s41592-018-0051-x