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LUYAO REN 6 years ago
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fd185fa872
2 changed files with 3 additions and 3 deletions
  1. +2
    -2
      inputs
  2. +1
    -1
      workflow.wdl

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inputs View File

{ {
"{{ project_name }}.Dedup_bam": "{{ Dedup_bam }}", "{{ project_name }}.Dedup_bam": "{{ Dedup_bam }}",
"{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",
"{{ project_name }}.fasta": "{{ fasta }}",
"{{ project_name }}.disk_size": "500", "{{ project_name }}.disk_size": "500",
"{{ project_name }}.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/strelka:2.9.10", "{{ project_name }}.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/strelka:2.9.10",
"{{ project_name }}.cluster_config": "OnDemand ecs.sn1ne.8xlarge img-ubuntu-vpc", "{{ project_name }}.cluster_config": "OnDemand ecs.sn1ne.8xlarge img-ubuntu-vpc",
"{{ project_name }}.Dedup_bam_index": "{{ Dedup_bam_index }}", "{{ project_name }}.Dedup_bam_index": "{{ Dedup_bam_index }}",
"{{ project_name }}.sample": "{{ sample }}", "{{ project_name }}.sample": "{{ sample }}",
"{{ project_name }}.ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/"
"{{ project_name }}.ref_dir": "{{ ref_dir }}"
} }

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workflow.wdl View File

import "./tasks/strelka.wdl" as strelka import "./tasks/strelka.wdl" as strelka




workflow project_name {
workflow {{ project_name }} {


File ref_dir File ref_dir
File fasta File fasta

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