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SV_MIE
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SV_MIE/inputs

inputs 9.4KB
原始文件 Normal View 文件歷史

first commit
5 年之前
improve
5 年之前
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indel and snv
5 年之前
improve
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first commit
5 年之前
improve
5 年之前
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first commit
5 年之前
improve
5 年之前
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cluster
5 年之前
improve
5 年之前
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first commit
5 年之前
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  1. {

  2.   "{{ project_name }}.INS_bedAnnotation.right_150": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.150",

  3.   "{{ project_name }}.INS_bedAnnotation.left_400": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.400",

  4.   "{{ project_name }}.INS_bedCoverage.right_200": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.200",

  5.   "{{ project_name }}.INS_bedCoverage.right_100": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.100",

  6.   "{{ project_name }}.INS_bedAnnotation.left_350": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.350",

  7.   "{{ project_name }}.INS_bedAnnotation.right_200": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.200",

  8.   "{{ project_name }}.MIEpos2bed.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/high_confidence_call_manuscript:v1.4",

  9.   "{{ project_name }}.INS_bedCoverage.docker": "registry-internal.cn-shanghai.aliyuncs.com/pgx-docker-registry/bedtools:v2.27.1",

  10.   "{{ project_name }}.diffBed.docker": "registry-internal.cn-shanghai.aliyuncs.com/pgx-docker-registry/bedtools:v2.27.1",

  11.   "{{ project_name }}.INS_bedCoverage.left_400": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.400",

  12.   "{{ project_name }}.INS_bedAnnotation.left_300": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.300",

  13.   "{{ project_name }}.INS_bedCoverage.right_400": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.400",

  14.   "{{ project_name }}.disk_size": "100",

  15.   "{{ project_name }}.DEL_bedCoverage.right_150": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.right.150",

  16.   "{{ project_name }}.DEL_bedCoverage.left_400": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.left.400",

  17.   "{{ project_name }}.DEL_bedCoverage.left_200": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.left.200",

  18.   "{{ project_name }}.INS_bedAnnotation.left_200": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.200",

  19.   "{{ project_name }}.INS_bedCoverage.right_50": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.50",

  20.   "{{ project_name }}.INS_bedAnnotation.right_300": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.300",

  21.   "{{ project_name }}.INS_bedAnnotation.right_350": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.350",

  22.   "{{ project_name }}.inputSamplesFile": "{{ inputSamplesFile }}",

  23.   "{{ project_name }}.DEL_bedCoverage.left_350": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.left.350",

  24.   "{{ project_name }}.diffBed.centromere": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/centro_pericentro_region.bed",

  25.   "{{ project_name }}.diffBed.sv_tra_bp": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/sv.tra.break.point.500.bed",

  26.   "{{ project_name }}.diffBed.sv_del": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/SV.DEL",

  27.   "{{ project_name }}.INS_bedAnnotation.right_50": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.50",

  28.   "{{ project_name }}.sample_name": "{{ sample_name }}",

  29.   "{{ project_name }}.DEL_bedCoverage.right_200": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.right.200",

  30.   "{{ project_name }}.INS_bedCoverage.left_250": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.250",

  31.   "{{ project_name }}.INS_bedCoverage.left_150": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.150",

  32.   "{{ project_name }}.INS_bedAnnotation.left_150": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.150",

  33.   "{{ project_name }}.INS_bedAnnotation.right_400": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.400",

  34.   "{{ project_name }}.INS_bedCoverage.right_150": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.150",

  35.   "{{ project_name }}.DEL_bedCoverage.right_250": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.right.250",

  36.   "{{ project_name }}.DEL_bedCoverage.right_300": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.right.300",

  37.   "{{ project_name }}.diffBed.sv_ins_bp": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/sv.ins.break.point.500.bed",

  38.   "{{ project_name }}.diffBed.sv_inv": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/SV.INV",

  39.   "{{ project_name }}.INS_bedCoverage.left_350": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.350",

  40.   "{{ project_name }}.INS_bedAnnotation.right_250": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.250",

  41.   "{{ project_name }}.DEL_bedCoverage.left_100": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.left.100",

  42.   "{{ project_name }}.DEL_bedCoverage.left_250": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.left.250",

  43.   "{{ project_name }}.INS_bedCoverage.left_300": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.300",

  44.   "{{ project_name }}.DEL_bedCoverage.right_100": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.right.100",

  45.   "{{ project_name }}.INS_bedAnnotation.left_250": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.250",

  46.   "{{ project_name }}.diffBed.lcr": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/btu356_LCR-hs38.bed",

  47.   "{{ project_name }}.INS_bedCoverage.left_50": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.50",

  48.   "{{ project_name }}.DEL_bedCoverage.left_50": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.left.50",

  49.   "{{ project_name }}.INS_bedCoverage.right_300": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.300",

  50.   "{{ project_name }}.INS_bedCoverage.right_250": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.250",

  51.   "{{ project_name }}.cluster_config": "OnDemand bcs.a2.xlarge img-ubuntu-vpc",

  52.   "{{ project_name }}.INS_bedAnnotation.left_100": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.100",

  53.   "{{ project_name }}.mergeBed.docker": "registry-internal.cn-shanghai.aliyuncs.com/pgx-docker-registry/bedtools:v2.27.1",

  54.   "{{ project_name }}.diffBed.sv_dup_bp": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/sv.dup.break.point.500.bed",

  55.   "{{ project_name }}.DEL_bedCoverage.docker": "registry-internal.cn-shanghai.aliyuncs.com/pgx-docker-registry/bedtools:v2.27.1",

  56.   "{{ project_name }}.diffBed.sv_del_bp": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/sv.del.break.point.500.bed",

  57.   "{{ project_name }}.DEL_bedCoverage.left_150": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.left.50",

  58.   "{{ project_name }}.INS_bedCoverage.right_350": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.350",

  59.   "{{ project_name }}.DEL_bedCoverage.right_350": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.right.350",

  60.   "{{ project_name }}.INS_bedCoverage.left_200": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.200",

  61.   "{{ project_name }}.DEL_bedCoverage.right_400": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.right.400",

  62.   "{{ project_name }}.INS_bedCoverage.left_100": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.100",

  63.   "{{ project_name }}.diffBed.sv_dup": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/SV.DUP",

  64.   "{{ project_name }}.INS_bedAnnotation.docker": "registry-internal.cn-shanghai.aliyuncs.com/pgx-docker-registry/bedtools:v2.27.1",

  65.   "{{ project_name }}.diffBed.easy_region": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/easy_region.bed",

  66.   "{{ project_name }}.diffBed.sv_inv_bp": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/sv.inv.break.point.500.bed",

  67.   "{{ project_name }}.INS_bedAnnotation.right_100": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.right.100",

  68.   "{{ project_name }}.DEL_bedCoverage.left_300": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.left.300",

  69.   "{{ project_name }}.INS_bedAnnotation.left_50": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/INS_break_points/sv.ins.left.50",

  70.   "{{ project_name }}.DEL_bedCoverage.right_50": "oss://pgx-result/renluyao/manuscript/bedregion_snp_distrubution/DEL_break_points/sv.del.right.50"

  71. }