LUYAO REN 5年前
コミット
e944261d99
1個のファイルの変更22行の追加22行の削除
  1. +22
    -22
      inputs

+ 22
- 22
inputs ファイルの表示

@@ -1,24 +1,24 @@
{
"{{ project_name }} .indexBam.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1",
"{{ project_name }} .Haplotyper.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }} .SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",
"{{ project_name }} .fasta": "GRCh38.d1.vd1.fa",
"{{ project_name }} .Dedup.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }} .dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
"{{ project_name }} .deduped_Metrics.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }} .disk_size": "500",
"{{ project_name }} .fastq_1": "{{ fastq_1 }}",
"{{ project_name }} .Metrics.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }} .STARref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/STAR_GRCh38_2.7.0d/",
"{{ project_name }} .fastq_2": "{{ fastq_2 }}",
"{{ project_name }} .dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
"{{ project_name }} .SplitReads.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }} .cluster_config": "OnDemand bcs.ps.g.8xlarge img-ubuntu-vpc",
"{{ project_name }} .Hardfiltration.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }} .BQSR.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }} .mapping.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/star:2.7.0",
"{{ project_name }} .db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf",
"{{ project_name }} .sample": "{{ sample }}",
"{{ project_name }} .dbsnp": "dbsnp_146.hg38.vcf",
"{{ project_name }} .ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/"
"{{ project_name }}.indexBam.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1",
"{{ project_name }}.Haplotyper.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }}.SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",
"{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",
"{{ project_name }}.Dedup.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }}.dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
"{{ project_name }}.deduped_Metrics.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }}.disk_size": "500",
"{{ project_name }}.fastq_1": "{{ fastq_1 }}",
"{{ project_name }}.Metrics.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }}.STARref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/STAR_GRCh38_2.7.0d/",
"{{ project_name }}.fastq_2": "{{ fastq_2 }}",
"{{ project_name }}.dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
"{{ project_name }}.SplitReads.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }}.cluster_config": "OnDemand bcs.ps.g.8xlarge img-ubuntu-vpc",
"{{ project_name }}.Hardfiltration.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }}.BQSR.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
"{{ project_name }}.mapping.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/star:2.7.0",
"{{ project_name }}.db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf",
"{{ project_name }}.sample": "{{ sample }}",
"{{ project_name }}.dbsnp": "dbsnp_146.hg38.vcf",
"{{ project_name }}.ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/"
}

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