samtools location · bc60b88ffa - Choppy for Reproducible Omics Pipeline

samtools location

master

LUYAO REN 6 年之前

父節點

4268ba27e8

當前提交

bc60b88ffa

共有 2 個檔案被更改，包括 3 行新增 和 1 行删除

統一視圖

							
								+ 2
								
								- 0
							
README.md查看文件
								
															Generate genome index files:
															
															Generate genome index files:
														
															The STAR you use 
														
															```bash
															
															```bash
														
															genomeDir=/path/to/GRCh38
															
															genomeDir=/path/to/GRCh38
														
															mkdir $genomeDir
															
															mkdir $genomeDir

							
								+ 1
								
								- 1
							
tasks/indexBam.wdl查看文件
								
																command <<<
															
																command <<<
														
																	set -o pipefail
															
																	set -o pipefail
														
																	set -e	
															
																	set -e	
														
																	samtools index ${sorted_bam}
															
																	/opt/conda/bin/samtools index ${sorted_bam}
														
																>>>
															
																>>>
														
																runtime {
															
																runtime {