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{ |
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{ |
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"{{ projecr_name }} .indexBam.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1", |
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"{{ projecr_name }} .Haplotyper.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ projecr_name }} .SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics", |
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"{{ projecr_name }} .fasta": "GRCh38.d1.vd1.fa", |
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"{{ projecr_name }} .Dedup.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ projecr_name }} .dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/", |
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"{{ projecr_name }} .deduped_Metrics.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ projecr_name }} .disk_size": "500", |
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"{{ projecr_name }} .fastq_1": "{{ fastq_1 }}", |
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"{{ projecr_name }} .Metrics.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ projecr_name }} .STARref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/STAR_GRCh38_2.7.0d/", |
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"{{ projecr_name }} .fastq_2": "{{ fastq_2 }}", |
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"{{ projecr_name }} .dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/", |
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"{{ projecr_name }} .SplitReads.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ projecr_name }} .cluster_config": "OnDemand bcs.ps.g.8xlarge img-ubuntu-vpc", |
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"{{ projecr_name }} .Hardfiltration.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ projecr_name }} .BQSR.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ projecr_name }} .mapping.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/star:2.7.0", |
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"{{ projecr_name }} .db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf", |
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"{{ projecr_name }} .sample": "{{ sample }}", |
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"{{ projecr_name }} .dbsnp": "dbsnp_146.hg38.vcf", |
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"{{ projecr_name }} .ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/" |
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"{{ project_name }} .indexBam.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1", |
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"{{ project_name }} .Haplotyper.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ project_name }} .SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics", |
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"{{ project_name }} .fasta": "GRCh38.d1.vd1.fa", |
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"{{ project_name }} .Dedup.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ project_name }} .dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/", |
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"{{ project_name }} .deduped_Metrics.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ project_name }} .disk_size": "500", |
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"{{ project_name }} .fastq_1": "{{ fastq_1 }}", |
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"{{ project_name }} .Metrics.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ project_name }} .STARref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/STAR_GRCh38_2.7.0d/", |
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"{{ project_name }} .fastq_2": "{{ fastq_2 }}", |
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"{{ project_name }} .dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/", |
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"{{ project_name }} .SplitReads.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ project_name }} .cluster_config": "OnDemand bcs.ps.g.8xlarge img-ubuntu-vpc", |
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"{{ project_name }} .Hardfiltration.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ project_name }} .BQSR.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ project_name }} .mapping.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/star:2.7.0", |
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"{{ project_name }} .db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf", |
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"{{ project_name }} .sample": "{{ sample }}", |
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"{{ project_name }} .dbsnp": "dbsnp_146.hg38.vcf", |
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"{{ project_name }} .ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/" |
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} |
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} |