qualimap rnaseq qc

tasks/multiqc.wdl

@@ -19,6 +19,7 @@ task multiqc {
 		mkdir -p /cromwell_root/tmp/fastqc
 		mkdir -p /cromwell_root/tmp/fastqscreen
 		mkdir -p /cromwell_root/tmp/bamqc
+		mkdir -p /cromwell_root/tmp/rnaseq
 
 		cp ${sep=" " read1_zip} ${sep=" " read2_zip} /cromwell_root/tmp/fastqc
 		cp ${sep=" " txt1} ${sep=" " txt2} /cromwell_root/tmp/fastqscreen