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Quality_control
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Quality_control/inputs

21 satır
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  1. {

  2.   "{{ project_name }}.benchmarking_dir": "oss://chinese-quartet/quartet-result-data/NCTR_benchmarking_20181215/",

  3.   "{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",

  4.   "{{ project_name }}.fastqc.disk_size": "150",

  5.   "{{ project_name }}.benchmark.cluster_config": "OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc",

  6.   "{{ project_name }}.fastqscreen.cluster_config": "OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc",

  7.   "{{ project_name }}.fastqc.cluster_config": "OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc",

  8.   "{{ project_name }}.benchmark.disk_size": "150",

  9.   "{{ project_name }}.fastqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",

  10.   "{{ project_name }}.benchmark.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-hap:latest",

  11.   "{{ project_name }}.inputSamplesFile": "{{ inputSamplesFile }}",

  12.   "{{ project_name }}.fastqscreen.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",

  13.   "{{ project_name }}.screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",

  14.   "{{ project_name }}.rtg.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  15.   "{{ project_name }}.fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",

  16.   "{{ project_name }}.bamqc.cluster_config": "OnDemand ecs.sn1ne.8xlarge img-ubuntu-vpc",

  17.   "{{ project_name }}.fastqscreen.disk_size": "100",

  18.   "{{ project_name }}.bamqc.disk_size": "500",

  19.   "{{ project_name }}.bamqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",

  20.   "{{ project_name }}.ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/"

  21. }