task bamqc { File bam File bai String docker String cluster_config String disk_size command <<< set -o pipefail set -e nt=$(nproc) /opt/qualimap/qualimap bamqc -bam ${bam} -outformat PDF:HTML -nt $nt -outdir result --java-mem-size=32G >>> runtime { docker:docker cluster:cluster_config systemDisk:"cloud_ssd 40" dataDisk:"cloud_ssd " + disk_size + " /cromwell_root/" } output { Array[File] qualimap = glob("result/*") } }