readme

README.md

@@ -101,6 +101,7 @@ qcsamples文件
 
 ```bash
 inputJIpiarsFile,inputSamplesFile,sample_id
+oss://pgx-result/renluyao/inputJIpiarsFileExample.tsv,oss://pgx-result/renluyao/inputSamplesFileExamples.tsv,1
 ```
 
 **inputJIpiarsFile**是计算Jaccard index的输入文件，按以下格式进行准备
@@ -121,11 +122,17 @@ oss://choppy-cromwell-result/test-choppy/wgs_quartettest_renluyao_0827/72f269f2-
 oss://chinese-quartet/quartet-test-data/fastqfiles/Fudan_DNA_LCL5_R1.fastq.gz	oss://chinese-quartet/quartet-test-data/fastqfiles/Fudan_DNA_LCL5_R2.fastq.gz	oss://choppy-cromwell-result/test-choppy/wgs_quartettest_renluyao_0827/7a72d0e6-302d-43ca-b6b0-daeaa0236d06/call-Dedup/Fudan_DNA_LCL5.sorted.deduped.bam	oss://choppy-cromwell-result/test-choppy/wgs_quartettest_renluyao_0827/7a72d0e6-302d-43ca-b6b0-daeaa0236d06/call-Dedup/Fudan_DNA_LCL5.sorted.deduped.bam.bai	oss://choppy-cromwell-result/test-choppy/wgs_quartettest_renluyao_0827/7a72d0e6-302d-43ca-b6b0-daeaa0236d06/call-Haplotyper/Fudan_DNA_LCL5_hc.vcf	LCL5
 ```
 
+`fastq_read1`和`fastq_read2`是两个fastq文件的oss地址
 
+`bam`是bam文件的oss地址
 
-**sample_id**
+`bai`是bam文件的索引文件的oss地址
 
+`vcf`是vcf文件的地址
 
+`sample_mark`是标识测序数据的样本，可填写LCL5、LCL6、LCL7和LCL8
+
+**sample_id**是choppy app内置的识别标志，写1即可
 
 ## App输出文件