Quality_control/README.md

# 中华家系1号标准物质室间质评报告系统分析流程

###1. 中华家系1号标准物质介绍



###2. 分析流程图



###3. 各模块运行流程

准备inputSamplesFIle (tsv格式)

```bash
#fastq_read1	#fastq_read2	#bam	#bai	#vcf	#sample_mark

```



(1) fastqc

(2) fastqscreen

(3) qualimap

(4) benchmarking ([hap.py](<https://github.com/Illumina/hap.py/blob/master/doc/happy.md>))

(5) multiqc

(6) VcfStats

注：可查询multiqc支持的指控模块，按需求添加 <https://multiqc.info/docs/#multiqc-modules>