Novoalign/inputs

{
  "{{ project_name }}.SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",
  "{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",
  "{{ project_name }}.PIdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/picard:2.20.2",
  "{{ project_name }}.platform": "{{ platform }}",
  "{{ project_name }}.NVref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/novoalign/",
  "{{ project_name }}.disk_size": "500",
  "{{ project_name }}.fastq_1": "{{ fastq_1 }}",
  "{{ project_name }}.NVdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/novocraft:V3.09.02",
  "{{ project_name }}.machine": "{{ machine }}",
  "{{ project_name }}.STdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
  "{{ project_name }}.library": "{{ library }}",
  "{{ project_name }}.index": "GRCh38_novoalign",
  "{{ project_name }}.fastq_2": "{{ fastq_2 }}",
  "{{ project_name }}.cluster_config": "OnDemand ecs.sn1ne.8xlarge img-ubuntu-vpc",
  "{{ project_name }}.SAMdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1",
  "{{ project_name }}.STref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/",
  "{{ project_name }}.sample": "{{ sample }}",
  "{{ project_name }}.id": "{{ id }}"
}