for loop · 0c986d2586 - Choppy for Reproducible Omics Pipeline

for loop

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LUYAO REN 4 年前

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0c986d2586

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tasks/getBam.wdl查看文件
								
																String disk_size
															
																String disk_size
														
																command <<<
															
																command <<<
														
																	cat ${region} | whlie read a
															
																	cat ${region} | while read a
														
																	do
															
																	do
														
																		/opt/conda/bin/samtools view -b ${bam} "$a" > $a.${sample}.bam
															
																		/opt/conda/bin/samtools view -b ${bam} "$a" > $a.${sample}.bam
														
																		/opt/conda/bin/samtools index $a.${sample}.bam
															
																		/opt/conda/bin/samtools index $a.${sample}.bam