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HaplotypeCaller
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HaplotypeCaller/defaults

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  1. {

  2.   "SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",

  3.   "fasta": "GRCh38.d1.vd1.fa",

  4.   "dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",

  5.   "disk_size": "800",

  6.   "docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v202010.02",

  7.   "cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",

  8.   "dbsnp": "dbsnp_146.hg38.vcf",

  9.   "ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/"

  10. }