String to File

tasks/GVCFtyper_chr3.wdl

@@ -3,7 +3,7 @@ task GVCFtyper_chr3 {
     File ref_dir
 	String SENTIEON_INSTALL_DIR
 	String fasta
-	String gvcf_dir
+	File gvcf_dir
 	String project
 	String docker
 	String cluster_config

tasks/GVCFtyper_chr4.wdl

@@ -3,7 +3,7 @@ task GVCFtyper_chr4 {
     File ref_dir
 	String SENTIEON_INSTALL_DIR
 	String fasta
-	String gvcf_dir
+	File gvcf_dir
 	String project
 	String docker
 	String cluster_config

tasks/GVCFtyper_chr7.wdl

@@ -3,7 +3,7 @@ task GVCFtyper_chr7 {
     File ref_dir
 	String SENTIEON_INSTALL_DIR
 	String fasta
-	String gvcf_dir
+	File gvcf_dir
 	String project
 	String docker
 	String cluster_config

tasks/GVCFtyper_chr8.wdl

@@ -3,7 +3,7 @@ task GVCFtyper_chr8 {
     File ref_dir
 	String SENTIEON_INSTALL_DIR
 	String fasta
-	String gvcf_dir
+	File gvcf_dir
 	String project
 	String docker
 	String cluster_config

tasks/GVCFtyper_chrX.wdl

@@ -3,7 +3,7 @@ task GVCFtyper_chrX {
     File ref_dir
 	String SENTIEON_INSTALL_DIR
 	String fasta
-	String gvcf_dir
+	File gvcf_dir
 	String project
 	String docker
 	String cluster_config

workflow.wdl

@@ -7,7 +7,7 @@ import "./tasks/GVCFtyper_chrX.wdl" as GVCFtyper_chrX
 
 workflow {{ project_name }} {
 
-	String gvcf_dir
+	File gvcf_dir
 	String SENTIEON_INSTALL_DIR
 	String docker
 	String project