Update 'tasks/CallableLoci.wdl' · d02d2bbc2c - Choppy for Reproducible Omics Pipeline

Update 'tasks/CallableLoci.wdl'

master

renluyao 4 years ago

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d05c056866

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d02d2bbc2c

1 changed files with 1 additions and 1 deletions

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tasks/CallableLoci.wdlView File
								
																	--minMappingQuality 20 \
															
																	--minMappingQuality 20 \
														
																	--minDepth 10 \
															
																	--minDepth 10 \
														
																	--minDepthForLowMAPQ 10 \
															
																	--minDepthForLowMAPQ 10 \
														
															        --fix_misencoded_quality_scores \
															
															                  --fix_misencoded_quality_scores \
														
																	-summary ${sample}_table.txt \
															
																	-summary ${sample}_table.txt \
														
																	-o ${sample}_callable_status.bed
															
																	-o ${sample}_callable_status.bed
														
																	>>>
															
																	>>>