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tasks/CallableLoci.wdl
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| --minMappingQuality 20 \ | --minMappingQuality 20 \ | ||||
| --minDepth 10 \ | --minDepth 10 \ | ||||
| --minDepthForLowMAPQ 10 \ | --minDepthForLowMAPQ 10 \ | ||||
| --fix_misencoded_quality_scores \ | |||||
| --fix_misencoded_quality_scores \ | |||||
| -summary ${sample}_table.txt \ | -summary ${sample}_table.txt \ | ||||
| -o ${sample}_callable_status.bed | -o ${sample}_callable_status.bed | ||||
| >>> | >>> |
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