FreeBayes/inputs

{
  "{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",
  "{{ project_name }}.dedup_bam_index": "{{ dedup_bam_index }}",
  "{{ project_name }}.disk_size": "500",
  "{{ project_name }}.mapper": "{{ mapper }}",
  "{{ project_name }}.sample_name": "{{ sample_name }}",
  "{{ project_name }}.half_read_length": "{{ half_read_length }}",
  "{{ project_name }}.breakChromo.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1",
  "{{ project_name }}.dedup_bam": "{{ dedup_bam }}",
  "{{ project_name }}.chromosomes": "Array[String] (optional, default = [\"chr1\", \"chr2\", \"chr3\", \"chr4\", \"chr5\", \"chr6\", \"chr7\", \"chr8\", \"chr9\", \"chr10\", \"chr11\", \"chr12\", \"chr13\", \"chr14\", \"chr15\", \"chr16\", \"chr17\", \"chr18\", \"chr19\", \"chr20\", \"chr21\", \"chr22\", \"chrX\"])",
  "{{ project_name }}.cluster_config": "OnDemand bcs.es.c.8xlarge img-ubuntu-vpc",
  "{{ project_name }}.concatVCF.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9",
  "{{ project_name }}.freebayes.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/freebayes:1.3.1",
  "{{ project_name }}.ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/"
}