task concatVCF { Array[File] vcf String mapper String sample_name String docker String cluster_config String disk_size command <<< set -o pipefail set -e /opt/hall-lab/bcftools-1.9/bin/bcftools concat -a ${sep=" " vcf} > ${sample_name}.${mapper}.fb.vcf >>> runtime { docker: docker cluster: cluster_config systemDisk: "cloud_ssd 40" dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" } output { File filtered = "${sample_name}.${mapper}.fb.vcf" } }