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chromosome breaks

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LUYAO REN 5 years ago
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aaab378fae
1 changed files with 0 additions and 1 deletions
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"{{ project_name }}.half_read_length": "{{ half_read_length }}", "{{ project_name }}.half_read_length": "{{ half_read_length }}",
"{{ project_name }}.breakChromo.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1", "{{ project_name }}.breakChromo.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1",
"{{ project_name }}.dedup_bam": "{{ dedup_bam }}", "{{ project_name }}.dedup_bam": "{{ dedup_bam }}",
"{{ project_name }}.chromosomes": "Array[String] (optional, default = [\"chr1\", \"chr2\", \"chr3\", \"chr4\", \"chr5\", \"chr6\", \"chr7\", \"chr8\", \"chr9\", \"chr10\", \"chr11\", \"chr12\", \"chr13\", \"chr14\", \"chr15\", \"chr16\", \"chr17\", \"chr18\", \"chr19\", \"chr20\", \"chr21\", \"chr22\", \"chrX\"])",
"{{ project_name }}.cluster_config": "OnDemand bcs.es.c.8xlarge img-ubuntu-vpc", "{{ project_name }}.cluster_config": "OnDemand bcs.es.c.8xlarge img-ubuntu-vpc",
"{{ project_name }}.concatVCF.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9", "{{ project_name }}.concatVCF.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9",
"{{ project_name }}.freebayes.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/freebayes:1.3.1", "{{ project_name }}.freebayes.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/freebayes:1.3.1",

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