docker version

README.md

-# BWA_FreeBayes
+# FreeBayes
 
 FreeBayes is a [Bayesian](http://en.wikipedia.org/wiki/Bayesian_inference) genetic variant detector designed to find small polymorphisms, specifically SNPs, indels, MNPs, and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.
 
 ####**Reference**
 
 1. Freebayes GitHub <https://github.com/ekg/freebayes>
-2. Freebayes paper <https://arxiv.org/abs/1207.3907>
+2. Freebayes paper <https://arxiv.org/abs/1207.3907>
+
+3. Freebayes parallel problem fix <https://github.com/ekg/freebayes/issues/301>

inputs

   "{{ project_name }}.fasta": "ucsc.hg19.chr20.unittest.fasta",
   "{{ project_name }}.disk_size": "500",
   "{{ project_name }}.ref_fa_fai": "ucsc.hg19.chr20.unittest.fasta.fai",
-  "{{ project_name }}.FBdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/freebayes:1.2.0",
+  "{{ project_name }}.FBdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/freebayes:1.3.1",
   "{{ project_name }}.cluster_config": "OnDemand ecs.sn1ne.8xlarge img-ubuntu-vpc",
   "{{ project_name }}.Dedup_bam_index": "{{ Dedup_bam_index }}",
   "{{ project_name }}.sample": "{{ sample }}",