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DELLY_somatic
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DELLY_somatic/inputs

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  1. {

  2.   "{{ project_name }}.SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",

  3.   "{{ project_name }}.fasta": "hg19_nochr.fa",

  4.   "{{ project_name }}.normal_read2": "{{ normal_read2 }}",

  5.   "{{ project_name }}.tumor_read2": "{{ tumor_read2 }}",

  6.   "{{ project_name }}.DELLYdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/delly:v0.8.1",

  7.   "{{ project_name }}.disk_size": "500",

  8.   "{{ project_name }}.tumor_read1": "{{ tumor_read1 }}",

  9.   "{{ project_name }}.sample_name": "{{ sample_name }}",

  10.   "{{ project_name }}.SMALLcluster_config": "OnDemand bcs.a2.xlarge img-ubuntu-vpc",

  11.   "{{ project_name }}.BCFdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9",

  12.   "{{ project_name }}.BIGcluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",

  13.   "{{ project_name }}.normal_read1": "{{ normal_read1 }}",

  14.   "{{ project_name }}.SENTIEONdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",

  15.   "{{ project_name }}.ref_dir": "oss://pgx-reference-data/hg19/"

  16. }