wgs_somatic_pipeline_v1/inputs

{
"{{ project_name }}.sample_id": "{{ sample_id }}",
"{{ project_name }}.normal_in1":"{{ normal_in1 }}",
"{{ project_name }}.normal_in2":"{{ normal_in2 }}",
"{{ project_name }}.tumor_in1":"{{ tumor_in1 }}",
"{{ project_name }}.tumor_in2":"{{ tumor_in2 }}",
"{{ project_name }}.Seq_platform":"{{ Seq_platform }}",
"{{ project_name }}.ref_fasta":"{{ ref_fasta }}",
"{{ project_name }}.ref_fasta_dir":"{{ ref_fasta_dir }}",
"{{ project_name }}.fastqc":true,
"{{ project_name }}.cluster_config":"{{cluster_config }}",
"{{ project_name }}.disk_size":"{{ disk_size }}",
"{{ project_name }}.docker_fastp":"{{ docker_fastp }}",
"{{ project_name }}.docker_sentieon":"{{ docker_sentieon }}",
"{{ project_name }}.SENTIEON_LICENSE":"{{ SENTIEON_LICENSE }}",
"{{ project_name }}.docker_qualimap":"{{ docker_qualimap }}",
"{{ project_name }}.annot_gff":"{{ annot_gff }}",
"{{ project_name }}.dbsnp_dir":"{{ dbsnp_dir }}",
"{{ project_name }}.dbmills_dir":"{{ dbmills_dir }}",
"{{ project_name }}.dbsnp":"{{ dbsnp }}",
"{{ project_name }}.db_mills":"{{ db_mills }}",
"{{ project_name }}.regions":"{{ regions }}",
"{{ project_name }}.interval_padding":"{{ interval_padding }}",
"{{ project_name }}.bamqc":false,
"{{ project_name }}.germline_resource":"{{ germline_resource }}",
"{{ project_name }}.germline_resource_tbi":"{{ germline_resource_tbi }}",
"{{ project_name }}.docker_manta":"{{ docker_manta }}",
"{{ project_name }}.docker_strelka":"{{ docker_strelka }}"
}