meng
/
wgs_somatic_pipeline_v1
Vērot 1
Pievienot zvaigznīti 0
Atdalīts 0
Kods Problēmas 0 Izmaiņu pieprasījumi 0 Laidieni 0 Vikivietne Aktivitāte
Nevar pievienot vairāk kā 25 tēmas Tēmai ir jāsākas ar burtu vai ciparu, tā var saturēt domu zīmes ('-') un var būt līdz 35 simboliem gara.
63 Revīzijas
1 Atzars
Atzars: master
Atzari Tagi
${ item.name }
Izveidot atzaru ${ searchTerm }
no 'master'
${ noResults }
wgs_somatic_pipeline_v1/defaults

29 rindas
1.4KB
Neapstrādāts Patstāvīgā saite Vainot Vēsture 

  1.     {

  2.         "normal_in1":"",

  3.         "normal_in2":"",

  4.         "tumor_in1":"",

  5.         "tumor_in2":"",

  6.         "sample_id":"",

  7.         "Seq_platform":"Illumina",

  8.         "ref_fasta":"GRCh38.d1.vd1.fa",

  9.         "ref_fasta_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/",

  10.         "docker_fastp":"registry-vpc.cn-shanghai.aliyuncs.com/easygene/fastp:v0.20.1_cv1",

  11. 		"docker_sentieon":"registry-vpc.cn-shanghai.aliyuncs.com/hcc1395_aliyun/sentieon-genomics:v202112.05",

  12.         "docker_qualimap":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/qualimap:2.0.0",

  13.         "docker_manta":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/manta:v1.6.0",

  14.         "docker_strelka":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/strelka:v2.9.10",

  15.         "SENTIEON_LICENSE":"172.25.2.5:8990",

  16.         "cluster_config":"OnDemand bcs.es.c.8xlarge img-ubuntu-vpc",

  17.         "disk_size":"500",

  18.         "fastqc":false,

  19.         "annot_gff":"oss://hcc1395/reference_genome/gencode.v36.annotation.gff",

  20.         "dbsnp_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/",

  21.         "dbmills_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/",

  22.         "dbsnp":"dbsnp_146.hg38.vcf",

  23.         "db_mills":"Mills_and_1000G_gold_standard.indels.hg38.vcf",

  24.         "bamqc":true,

  25.         "germline_resource":"oss://hcc1395/reference_genome/gnomAD/af-only-gnomad.v3.1.1.vcf.gz",

  26.         "germline_resource_tbi":"oss://hcc1395/reference_genome/gnomAD/af-only-gnomad.v3.1.1.vcf.gz.tbi"

  27. 

  28. 

  29.     }