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{ |
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{ |
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"{{ project_name }}.sample_id":"{{ sample_id }}", |
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"{{ project_name }}.normal_in1":"{{ normal_in1 }}", |
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"{{ project_name }}.normal_in2":"{{ normal_in2 }}", |
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"{{ project_name }}.tumor_in1":"{{ tumor_in1 }}", |
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"{{ project_name }}.tumor_in2":"{{ tumor_in2 }}", |
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"{{ project_name }}.Seq_platform":"{{ Seq_platform }}", |
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"{{ project_name }}.ref_fasta":"{{ ref_fasta }}", |
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"{{ project_name }}.ref_fasta_dir":"{{ ref_fasta_dir }}", |
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"{{ project_name }}.fastqc":true, |
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"{{ project_name }}.cluster_config":"{{cluster_config }}", |
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"{{ project_name }}.disk_size":"{{ disk_size }}", |
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"{{ project_name }}.docker_fastp":"{{ docker_fastp }}", |
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"{{ project_name }}.docker_sentieon":"{{ docker_sentieon }}", |
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"{{ project_name }}.SENTIEON_LICENSE":"{{ SENTIEON_LICENSE }}", |
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"{{ project_name }}.docker_qualimap":"{{ docker_qualimap }}", |
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"{{ project_name }}.annot_gff":"{{ annot_gff }}", |
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"{{ project_name }}.dbsnp_dir":"{{ dbsnp_dir }}", |
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"{{ project_name }}.dbmills_dir":"{{ dbmills_dir }}", |
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"{{ project_name }}.dbsnp":"{{ dbsnp }}", |
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"{{ project_name }}.db_mills":"{{ db_mills }}", |
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"{{ project_name }}.regions":"{{ regions }}", |
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"{{ project_name }}.interval_padding":"{{ interval_padding }}", |
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"{{ project_name }}.bamqc":false, |
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"{{ project_name }}.germline_resource":"{{ germline_resource }}", |
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"{{ project_name }}.germline_resource_tbi":"{{ germline_resource_tbi }}", |
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"{{ project_name }}.docker_manta":"{{ docker_manta }}", |
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"{{ project_name }}.docker_strelka":"{{ docker_strelka }}" |
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"{{ project_name }}.sample_id": "{{ sample_id }}", |
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"{{ project_name }}.normal_in1": "{{ normal_in1 }}", |
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"{{ project_name }}.normal_in2": "{{ normal_in2 }}", |
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"{{ project_name }}.tumor_in1": "{{ tumor_in1 }}", |
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"{{ project_name }}.tumor_in2": "{{ tumor_in2 }}", |
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"{{ project_name }}.Seq_platform": "{{ Seq_platform }}", |
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"{{ project_name }}.ref_fasta": "{{ ref_fasta }}", |
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"{{ project_name }}.ref_fasta_dir": "{{ ref_fasta_dir }}", |
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"{{ project_name }}.fastqc": true, |
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"{{ project_name }}.cluster_config": "{{cluster_config }}", |
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"{{ project_name }}.disk_size": "{{ disk_size }}", |
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"{{ project_name }}.docker_fastp": "{{ docker_fastp }}", |
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"{{ project_name }}.docker_sentieon": "{{ docker_sentieon }}", |
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"{{ project_name }}.SENTIEON_LICENSE": "{{ SENTIEON_LICENSE }}", |
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"{{ project_name }}.docker_qualimap": "{{ docker_qualimap }}", |
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"{{ project_name }}.annot_gff": "{{ annot_gff }}", |
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"{{ project_name }}.dbsnp_dir": "{{ dbsnp_dir }}", |
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"{{ project_name }}.dbmills_dir": "{{ dbmills_dir }}", |
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"{{ project_name }}.dbsnp": "{{ dbsnp }}", |
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"{{ project_name }}.db_mills": "{{ db_mills }}", |
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"{{ project_name }}.regions": "{{ regions }}", |
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"{{ project_name }}.interval_padding": "{{ interval_padding }}", |
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"{{ project_name }}.bamqc": false, |
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"{{ project_name }}.germline_resource": "{{ germline_resource }}", |
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"{{ project_name }}.germline_resource_tbi": "{{ germline_resource_tbi }}", |
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"{{ project_name }}.docker_manta": "{{ docker_manta }}", |
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"{{ project_name }}.docker_strelka": "{{ docker_strelka }}" |
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} |
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} |