共有 1 个文件被更改，包括 4 次插入 和 4 次删除
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workflow_total_pipeline.wdl
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| call TNscope.sentieon_TNscope as sentieon_TNscope{ | call TNscope.sentieon_TNscope as sentieon_TNscope{ | ||||
| input: | input: | ||||
| sample_id = sample_id, | sample_id = sample_id, | ||||
| tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | |||||
| tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | |||||
| normal_bam = Sentieon_BQSR_normal.recaled_bam, | |||||
| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | |||||
| tumor_bam = SentieonFastqToBam_tumor.deduped_bam, | |||||
| tumor_bam_bai = SentieonFastqToBam_tumor.deduped_bam_bai, | |||||
| normal_bam = SentieonFastqToBam_normal.deduped_bam, | |||||
| normal_bam_bai = SentieonFastqToBam_normal.deduped_bam_bai, | |||||
| tumor_name = sample_id+'_T', | tumor_name = sample_id+'_T', | ||||
| normal_name = sample_id+'_N', | normal_name = sample_id+'_N', | ||||
| tumor_recall_data = Sentieon_BQSR_tumor.recal_table, | tumor_recall_data = Sentieon_BQSR_tumor.recal_table, |
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