1 changed files with 4 additions and 4 deletions
+ 4
- 4
tasks/BQSR.wdl
View File
| nt=$(nproc) | nt=$(nproc) | ||||
| if [${regions}];then | |||||
| INTERVAL="--interval ${regions} --interval_padding ${interval_padding}" | |||||
| else | |||||
| #if [${regions}];then | |||||
| # INTERVAL="--interval ${regions} --interval_padding ${interval_padding}" | |||||
| #else | |||||
| INTERVAL="" | INTERVAL="" | ||||
| fi | |||||
| #fi | |||||
| sentieon driver -t $nt \ | sentieon driver -t $nt \ | ||||
| -r ${ref_dir}/${ref_fasta} -i ${deduped_bam} \ | -r ${ref_dir}/${ref_fasta} -i ${deduped_bam} \ |
Loading…