更新 'tasks/strelka.wdl'

tasks/strelka.wdl

@@ -1,6 +1,6 @@
 task strelka_calling{
-    File tumour_bam
-    File tumour_bam_bai
+    File tumor_bam
+    File tumor_bam_bai
     File normal_bam
     File normal_bam_bai
     String ref_fasta
@@ -20,7 +20,7 @@ task strelka_calling{
     nt=$(nproc)
     /home/biosoft/strelka-2.9.10.centos6_x86_64/bin/configureStrelkaSomaticWorkflow.py \
     --normalBam ${normal_bam} \
-    --tumorBam ${tumour_bam} \
+    --tumorBam ${tumor_bam} \
     --referenceFasta ${ref_dir}/${ref_fasta} \
     --indelCandidates ${manta_indel_vcf} \
     --runDir ${out_dir}