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  1. {
  2. "{{ project_name }}.tumour_bam": "{{ tumour_bam }}",
  3. "{{ project_name }}.tumour_bam_bai": "{{ tumour_bam_bai }}",
  4. "{{ project_name }}.normal_bam": "{{ normal_bam }}",
  5. "{{ project_name }}.normal_bam_bai": "{{ normal_bam_bai }}",
  6. "{{ project_name }}.ref_fasta": "{{ref_fasta}}",
  7. "{{ project_name }}.ref_dir": "{{ ref_dir }}",
  8. "{{ project_name }}.sample_id": "{{ sample_id }}",
  9. "{{ project_name }}.manta_indel_vcf": "{{ manta_indel_vcf }}",
  10. "{{ project_name }}.manta_indel_vcf_index": "{{ manta_indel_vcf_index }}",
  11. "{{ project_name }}.docker_stralka": "{{ docker_stralka }}",
  12. "{{ project_name }}.cluster_config": "{{ cluster_config }}",
  13. "{{ project_name }}.disk_size": "{{ disk_size }}"
  14. }