strelka_pipeline/inputs

{
    "{{ project_name }}.tumor_bam": "{{ tumor_bam }}",
    "{{ project_name }}.tumor_bam_bai": "{{ tumor_bam_bai }}",
    "{{ project_name }}.normal_bam": "{{ normal_bam }}",
    "{{ project_name }}.normal_bam_bai": "{{ normal_bam_bai }}",
    "{{ project_name }}.ref_fasta": "{{ref_fasta}}",
    "{{ project_name }}.ref_dir": "{{ ref_dir }}",
    "{{ project_name }}.ref_bed": "{{ ref_bed }}",
    "{{ project_name }}.sample_id": "{{ sample_id }}",
    "{{ project_name }}.manta_indel_vcf": "{{ manta_indel_vcf }}",
    "{{ project_name }}.manta_indel_vcf_index": "{{ manta_indel_vcf_index }}",
    "{{ project_name }}.docker_stralka": "{{ docker_stralka }}",
    "{{ project_name }}.cluster_config": "{{ cluster_config }}",
    "{{ project_name }}.disk_size": "{{ disk_size }}",
	"{{ project_name }}.docker_bcftools": "{{ docker_bcftools }}",
    "{{ project_name }}.docker_annovar": "{{ docker_annovar }}",
    "{{ project_name }}.annovar_database": "{{ annovar_database }}"


}