{ "{{ project_name }}.tumor_bam": "{{ tumor_bam }}", "{{ project_name }}.tumor_bam_bai": "{{ tumor_bam_bai }}", "{{ project_name }}.normal_bam": "{{ normal_bam }}", "{{ project_name }}.normal_bam_bai": "{{ normal_bam_bai }}", "{{ project_name }}.ref_fasta": "{{ref_fasta}}", "{{ project_name }}.ref_dir": "{{ ref_dir }}", "{{ project_name }}.ref_bed": "{{ ref_bed }}", "{{ project_name }}.sample_id": "{{ sample_id }}", "{{ project_name }}.manta_indel_vcf": "{{ manta_indel_vcf }}", "{{ project_name }}.manta_indel_vcf_index": "{{ manta_indel_vcf_index }}", "{{ project_name }}.docker_stralka": "{{ docker_stralka }}", "{{ project_name }}.cluster_config": "{{ cluster_config }}", "{{ project_name }}.disk_size": "{{ disk_size }}", "{{ project_name }}.docker_bcftools": "{{ docker_bcftools }}", "{{ project_name }}.docker_annovar": "{{ docker_annovar }}", "{{ project_name }}.annovar_database": "{{ annovar_database }}" }