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更新 'tasks/stralka.wdl'

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meng 2 years ago
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87bad9a8ff
1 changed files with 3 additions and 3 deletions
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      tasks/stralka.wdl

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tasks/stralka.wdl View File

task strelka_calling{ task strelka_calling{
File tumour_bam
File tumour_bam_bai
File tumor_bam
File tumor_bam_bai
File normal_bam File normal_bam
File normal_bam_bai File normal_bam_bai
String ref_fasta String ref_fasta
nt=$(nproc) nt=$(nproc)
/home/biosoft/strelka-2.9.10.centos6_x86_64/bin/configureStrelkaSomaticWorkflow.py \ /home/biosoft/strelka-2.9.10.centos6_x86_64/bin/configureStrelkaSomaticWorkflow.py \
--normalBam ${normal_bam} \ --normalBam ${normal_bam} \
--tumorBam ${tumour_bam} \
--tumorBam ${tumor_bam} \
--referenceFasta ${ref_dir}/${ref_fasta} \ --referenceFasta ${ref_dir}/${ref_fasta} \
--runDir ${out_dir} --runDir ${out_dir}

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