更新 'tasks/stralka.wdl' · 13b9851f60 - Choppy for Reproducible Omics Pipeline

更新 'tasks/stralka.wdl'

master

meng 2 years ago

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8d95f40fd2

commit

13b9851f60

1 changed files with 2 additions and 0 deletions

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tasks/stralka.wdlView File
								
															    String ref_fasta
															
															    String ref_fasta
														
															    File ref_dir
															
															    File ref_dir
														
															    String sample_id
															
															    String sample_id
														
															    File ref_bed
														
															    File? manta_indel_vcf
															
															    File? manta_indel_vcf
														
															    File? manta_indel_vcf_index
															
															    File? manta_indel_vcf_index
														
															    --normalBam ${normal_bam} \
															
															    --normalBam ${normal_bam} \
														
															    --tumorBam ${tumor_bam} \
															
															    --tumorBam ${tumor_bam} \
														
															    --referenceFasta ${ref_dir}/${ref_fasta} \
															
															    --referenceFasta ${ref_dir}/${ref_fasta} \
														
															    --callRegions ${ref_bed} \
														
															    --runDir ${out_dir}
															
															    --runDir ${out_dir}
														
															    ls ${out_dir}
															
															    ls ${out_dir}